Download Tool File

The Download Tool File feature allows you to export your current network as a .json file.
This file can later be re-imported into the application using the NAViFluX JSON Upload option under the Upload File feature with all positions retained.

Important

This option only exports the nodes and edges currently visible in the viewport. It does not export the full model.

Recommendation

To export the entire model, we recommend selecting all pathways in the dropdown, applying any changes, and then downloading the tool file.

Sample .json Structure

{
  "nodes": [
    {
      "id": "PPC",
      "temp_id": "Anaplerotic reactions__PPC",
      "type": "custom",
      "position": {
        "x": 0,
        "y": 30
      },
      "data": {
        "abbreviation": "PPC",
        "info": "Phosphoenolpyruvate carboxylase",
        "flux": "Not Calculated",
        "subsystem": "Anaplerotic reactions",
        "lower_bound": 0,
        "upper_bound": 1000,
        "color": "#e0e0e0",
        "fontSize": 8,
        "size": null,
        "gene": [
          "b3956"
        ],
        "type": "reaction",
        "BIGG_crossref": [
          "PPC"
        ],
        "KEGG_crossref": [
          "R00345"
        ],
        "EC_crossref": [
          "4.1.1.31"
        ],
        "stoichiometry": {
          "co2_c": -1,
          "h2o_c": -1,
          "h_c": 1,
          "oaa_c": 1,
          "pep_c": -1,
          "pi_c": 1
        }
      },
      "width": 80,
      "height": 40
    },
    {
      "id": "pep_c",
      "temp_id": "Anaplerotic reactions__pep_c",
      "type": "custom",
      "position": {
        "x": 600,
        "y": 30
      },
      "data": {
        "abbreviation": "pep_c",
        "info": "Phosphoenolpyruvate",
        "formula": "C3H2O6P",
        "compartment": "Cytoplasm",
        "crossref": [
          "CHEBI:18021",
          "CHEBI:44894",
          "CHEBI:26054",
          "CHEBI:14812",
          "CHEBI:26055",
          "CHEBI:8147",
          "CHEBI:58702",
          "CHEBI:44897"
        ],
        "weight": "No weight",
        "color": "#FFA500",
        "fontSize": 8,
        "type": "metabolite"
      },
      "width": 30,
      "height": 30
    },
  ],
  "edges": [
    {
      "id": "edge_1764233361864_9j13",
      "source_id": "Anaplerotic reactions__pep_c",
      "target_id": "Anaplerotic reactions__PPC",
      "source": "pep_c",
      "target": "PPC",
      "sourceHandle": "right",
      "targetHandle": "left",
      "type": "default",
      "markerEnd": {
        "type": "arrowclosed",
        "color": "#222"
      },
      "style": {
        "strokeWidth": 2,
        "stroke": "#222"
      }
    },
  ]
}